PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18971.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 311aa    MW: 35625.1 Da    PI: 5.0322
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18971.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14e-131358146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g W +eEde l++ vk++G+++W++I ++  + Rt+k+c++rw +
       KHN18971.1 13 KGQWEAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 58
                     799************************8887799**********87 PP

2Myb_DNA-binding43.19.9e-1469108344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++ eE+   +++ +q+G++ W++Ia++++ gRt++++k++w
       KHN18971.1  69 KFSLEEERVVIELQAQFGNR-WAKIASYLP-GRTDNDVKNFW 108
                      799*****************.*********.*********** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-20661IPR009057Homeodomain-like
PROSITE profilePS5129414.107860IPR017930Myb domain
SMARTSM007171.6E-91262IPR001005SANT/Myb domain
SuperFamilySSF466891.45E-2712108IPR009057Homeodomain-like
PfamPF139215.2E-131675No hitNo description
CDDcd001671.42E-101660No hitNo description
PROSITE profilePS5129419.46361116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-1862114IPR009057Homeodomain-like
SMARTSM007176.6E-1366114IPR001005SANT/Myb domain
CDDcd001671.26E-1069108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MHGKKEQEEY IRKGQWEAEE DEVLLNHVKK YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL  60
RPNLKNGCKF SLEEERVVIE LQAQFGNRWA KIASYLPGRT DNDVKNFWSS RQKRLARILQ  120
TSATTFRSQK NKTKVPSFLD VPTLEAPKFS SSSEGEPSSK PQTCTLPYID NSEVIQMVSL  180
PDLIKSELPS SDTIHVEQEF TLFENYKSTE QIAFPQIPEL QNGLTFSMEN QDLVPTIEEP  240
CFIEDLCPFD VSEFGIGPQH PFGFPFFEPP GSCRFGTRDA IDNFKISDSF FDDLPVDMFD  300
HMDPPASPSN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-271111425126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-111AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520442.10.0PREDICTED: transcription factor MYB57-like
TrEMBLA0A0B2QBI30.0A0A0B2QBI3_GLYSO; Transcription factor GAMYB
TrEMBLK7KEG50.0K7KEG5_SOYBN; Uncharacterized protein
STRINGGLYMA03G26830.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.14e-76MYB family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]